Methylation Data was exported to the following formats:
This section contains summary metrics for each sample as well as links to exported files. The summary table below contains the following metrics. It is also available as csv file.
sampleName | sites_bigBedFile | sites_bedFile | sites_num | sites_covgMean | sites_covgMedian | sites_covgPerc25 | sites_covgPerc75 | sites_numCovg5 | sites_numCovg10 | sites_numCovg30 | sites_numCovg60 | tiling_num | tiling_covgMean | tiling_covgMedian | tiling_covgPerc25 | tiling_covgPerc75 | tiling_numCovg5 | tiling_numCovg10 | tiling_numCovg30 | tiling_numCovg60 | tiling_numSitesMean | tiling_numSitesMedian | tiling_numSites2 | tiling_numSites5 | tiling_numSites10 | tiling_numSites20 | genes_num | genes_covgMean | genes_covgMedian | genes_covgPerc25 | genes_covgPerc75 | genes_numCovg5 | genes_numCovg10 | genes_numCovg30 | genes_numCovg60 | genes_numSitesMean | genes_numSitesMedian | genes_numSites2 | genes_numSites5 | genes_numSites10 | genes_numSites20 | promoters_num | promoters_covgMean | promoters_covgMedian | promoters_covgPerc25 | promoters_covgPerc75 | promoters_numCovg5 | promoters_numCovg10 | promoters_numCovg30 | promoters_numCovg60 | promoters_numSitesMean | promoters_numSitesMedian | promoters_numSites2 | promoters_numSites5 | promoters_numSites10 | promoters_numSites20 | cpgislands_num | cpgislands_covgMean | cpgislands_covgMedian | cpgislands_covgPerc25 | cpgislands_covgPerc75 | cpgislands_numCovg5 | cpgislands_numCovg10 | cpgislands_numCovg30 | cpgislands_numCovg60 | cpgislands_numSitesMean | cpgislands_numSitesMedian | cpgislands_numSites2 | cpgislands_numSites5 | cpgislands_numSites10 | cpgislands_numSites20 | |
HSC_1 | HSC_1 | bigBed | bed | 1235911 | 66.2867666037441 | 55 | 29 | 88 | 1235911 | 1157152 | 921325 | 567628 | 156316 | 525.329032216792 | 157 | 79 | 385 | 156316 | 153783 | 142894 | 127558 | 7.15895059940928 | 3 | 139434 | 58427 | 28415 | 14115 | 21524 | 2561.17213343245 | 1619.5 | 457 | 3546 | 21524 | 21435 | 21040 | 20487 | 35.6253038077235 | 22 | 20961 | 18234 | 15525 | 11868 | 18853 | 2011.27958415106 | 1509 | 369 | 3097 | 18853 | 18749 | 18235 | 17667 | 23.8678587664798 | 17 | 18238 | 15209 | 12541 | 9133 | 14410 | 2662.32755031228 | 2071.5 | 979 | 3695.5 | 14410 | 14396 | 14311 | 14161 | 32.5673116228369 | 24 | 14313 | 13673 | 12000 | 8697 |
HSC_2 | HSC_2 | bigBed | bed | 1276370 | 77.9783307348183 | 65 | 35 | 104 | 1276370 | 1209841 | 1011803 | 701130 | 160929 | 619.475482976965 | 203 | 103 | 474 | 160929 | 158685 | 149011 | 136570 | 7.3933341055192 | 3 | 142830 | 60606 | 29465 | 14497 | 21739 | 3009.95772574635 | 1923 | 546.5 | 4140.5 | 21739 | 21656 | 21300 | 20847 | 36.8080835358718 | 23 | 21135 | 18430 | 15770 | 12099 | 19170 | 2285.54136671883 | 1718 | 429 | 3530 | 19170 | 19062 | 18593 | 18047 | 24.3655099257463 | 18 | 18458 | 15383 | 12718 | 9323 | 14504 | 3036.01068670712 | 2377.5 | 1136 | 4199.5 | 14504 | 14496 | 14425 | 14288 | 33.160716718899 | 25 | 14413 | 13766 | 12140 | 8865 |
CLP_1 | CLP_1 | bigBed | bed | 1324526 | 42.346316342601 | 37 | 21 | 56 | 1324526 | 1232452 | 807677 | 291351 | 166694 | 337.362562539743 | 99 | 42 | 259 | 166694 | 162781 | 143053 | 107541 | 7.67221868303701 | 3 | 144306 | 63049 | 31579 | 15289 | 22030 | 1727.98338629142 | 1013 | 287 | 2373 | 22030 | 21884 | 21247 | 20338 | 37.9351426771087 | 24 | 21265 | 18536 | 15925 | 12345 | 19547 | 1271.49071468768 | 852 | 203 | 1932 | 19547 | 19358 | 18578 | 17511 | 24.4487043491438 | 18 | 18649 | 15521 | 12857 | 9372 | 14625 | 1763.85818803419 | 1293 | 583 | 2450 | 14625 | 14607 | 14475 | 14271 | 33.3242267338874 | 25 | 14531 | 13891 | 12273 | 8921 |
CLP_2 | CLP_2 | bigBed | bed | 1371313 | 34.2409690566632 | 29 | 17 | 46 | 1371313 | 1265890 | 683373 | 161971 | 171763 | 273.828670901184 | 99 | 52 | 237 | 171763 | 169080 | 151908 | 117573 | 7.94325592170035 | 3 | 154048 | 66577 | 32533 | 15487 | 22183 | 1380.74376775008 | 852 | 264 | 1868 | 22183 | 22078 | 21465 | 20505 | 39.0417229273562 | 25 | 21540 | 18763 | 16119 | 12548 | 19713 | 927.476233957287 | 657 | 181 | 1408 | 19713 | 19599 | 18775 | 17607 | 24.6126685861494 | 18 | 18934 | 15717 | 12924 | 9438 | 14640 | 1255.45020491803 | 954 | 447 | 1737 | 14640 | 14619 | 14453 | 14188 | 33.2865513012672 | 25 | 14538 | 13909 | 12288 | 8929 |
CMP_1 | CMP_1 | bigBed | bed | 1357079 | 41.3543375146178 | 36 | 20 | 56 | 1357079 | 1257918 | 811289 | 288518 | 170074 | 330.603778355304 | 106 | 47 | 273 | 170074 | 166109 | 148533 | 113291 | 7.8608096368796 | 3 | 150327 | 65283 | 32241 | 15442 | 22122 | 1678.82718560709 | 1005 | 296.25 | 2289 | 22122 | 21997 | 21373 | 20520 | 38.7285534251508 | 24 | 21432 | 18688 | 16045 | 12479 | 19647 | 1169.91846083372 | 801 | 206 | 1772.5 | 19647 | 19447 | 18697 | 17647 | 24.6311057230894 | 18 | 18836 | 15624 | 12888 | 9426 | 14645 | 1608.95247524752 | 1200 | 550 | 2224 | 14645 | 14620 | 14487 | 14252 | 33.4371849025753 | 25 | 14554 | 13911 | 12284 | 8932 |
CMP_2 | CMP_2 | bigBed | bed | 1384069 | 37.9897013804948 | 33 | 20 | 50 | 1384069 | 1314111 | 791153 | 210905 | 172309 | 305.409084841767 | 112 | 58 | 266 | 172309 | 170363 | 156382 | 127444 | 8.01714252620606 | 3 | 155198 | 67180 | 32889 | 15625 | 22202 | 1540.22034050986 | 949 | 295 | 2077.75 | 22202 | 22129 | 21625 | 20791 | 39.3976505536052 | 25 | 21580 | 18809 | 16161 | 12591 | 19759 | 1027.82843261299 | 732 | 202 | 1562 | 19759 | 19661 | 18966 | 17982 | 24.7933020154569 | 18 | 19016 | 15727 | 12975 | 9476 | 14656 | 1393.95912936681 | 1060 | 499 | 1929 | 14656 | 14629 | 14509 | 14278 | 33.5228914020984 | 25 | 14560 | 13927 | 12324 | 8962 |
CD4_1 | CD4_1 | bigBed | bed | 1357854 | 50.9557485561776 | 45 | 27 | 68 | 1357854 | 1295008 | 961049 | 454953 | 169818 | 407.982628461058 | 127 | 60 | 325 | 169818 | 166768 | 153559 | 128506 | 7.86527480164476 | 3 | 149307 | 65070 | 32243 | 15512 | 22129 | 2080.12296082064 | 1252 | 362 | 2839 | 22129 | 22031 | 21508 | 20862 | 38.8019173642992 | 24 | 21423 | 18677 | 16067 | 12504 | 19671 | 1491.93884398353 | 1023 | 257 | 2278 | 19671 | 19525 | 18926 | 18048 | 24.7692074556751 | 18 | 18830 | 15645 | 12943 | 9472 | 14656 | 2060.78766375546 | 1542 | 716 | 2850.5 | 14656 | 14639 | 14548 | 14368 | 33.6446382340918 | 25 | 14562 | 13931 | 12332 | 8969 |
CD4_2 | CD4_2 | bigBed | bed | 1382289 | 39.2290591909507 | 34 | 21 | 51 | 1382289 | 1312709 | 803435 | 235326 | 171745 | 316.004046697138 | 113 | 61 | 264 | 171745 | 169761 | 156093 | 130219 | 8.00683384490647 | 3 | 154953 | 66977 | 32772 | 15608 | 22174 | 1589.196265897 | 970 | 296 | 2140 | 22174 | 22092 | 21582 | 20784 | 39.3445404626879 | 25 | 21556 | 18808 | 16146 | 12582 | 19727 | 1093.70654433011 | 766 | 203 | 1667.5 | 19727 | 19621 | 18966 | 17972 | 24.8447239480729 | 18 | 18985 | 15727 | 12965 | 9481 | 14648 | 1489.20466957946 | 1116 | 518 | 2054 | 14648 | 14629 | 14506 | 14282 | 33.6015805968116 | 25 | 14556 | 13928 | 12320 | 8983 |
B_cell_1 | B_cell_1 | bigBed | bed | 1360890 | 47.9284144934565 | 41 | 24 | 65 | 1360890 | 1290543 | 894902 | 403853 | 170057 | 384.061526429374 | 107 | 54 | 282 | 170057 | 166922 | 151068 | 120131 | 7.88287484797591 | 3 | 149225 | 65232 | 32326 | 15536 | 22127 | 2002.43833325801 | 1188 | 325.5 | 2760 | 22127 | 22029 | 21502 | 20677 | 38.9115581960572 | 24 | 21426 | 18697 | 16093 | 12515 | 19683 | 1492.55596199766 | 1011 | 233 | 2282 | 19683 | 19552 | 18888 | 17875 | 24.8339142294287 | 18 | 18832 | 15661 | 12958 | 9493 | 14656 | 2079.35159661572 | 1546.5 | 703 | 2893 | 14656 | 14638 | 14547 | 14368 | 33.7105872734705 | 26 | 14564 | 13933 | 12338 | 8998 |
B_cell_2 | B_cell_2 | bigBed | bed | 1377347 | 35.2052155339214 | 31 | 18 | 46 | 1377347 | 1283938 | 716745 | 170245 | 171857 | 282.515411068505 | 102 | 54 | 241 | 171857 | 169221 | 153495 | 121901 | 7.97821277581514 | 3 | 154560 | 66816 | 32648 | 15532 | 22168 | 1418.30819198845 | 871 | 267 | 1904 | 22168 | 22066 | 21484 | 20576 | 39.1948420199838 | 25 | 21534 | 18774 | 16144 | 12574 | 19737 | 962.244819374778 | 681 | 184 | 1467 | 19737 | 19610 | 18853 | 17719 | 24.7513259584786 | 18 | 18971 | 15730 | 12956 | 9452 | 14650 | 1307.39740614334 | 985 | 466 | 1810 | 14650 | 14622 | 14488 | 14231 | 33.4678430303856 | 25 | 14552 | 13924 | 12304 | 8948 |
Eryth_1 | Eryth_1 | bigBed | bed | 1169323 | 20.8486021398707 | 17 | 11 | 25 | 1169323 | 946328 | 188932 | 15202 | 168403 | 146.227276236172 | 55 | 27 | 127 | 168403 | 162343 | 121236 | 79326 | 6.77326113395494 | 3 | 146809 | 58771 | 27497 | 13049 | 22052 | 745.779475784509 | 444 | 143 | 969.25 | 22052 | 21856 | 20673 | 19155 | 33.1795391124314 | 21 | 21251 | 18282 | 15472 | 11507 | 19561 | 485.548029241859 | 326 | 98 | 689 | 19561 | 19312 | 17866 | 16158 | 20.4185987775926 | 15 | 18611 | 15133 | 12215 | 8284 | 14597 | 649.540042474481 | 457 | 218 | 842 | 14597 | 14563 | 14249 | 13774 | 27.4284643684426 | 21 | 14448 | 13598 | 11537 | 7781 |
Eryth_2 | Eryth_2 | bigBed | bed | 873811 | 13.33719648757 | 10 | 7 | 14 | 873811 | 453270 | 23638 | 7004 | 147403 | 84.5867044768424 | 31 | 15 | 72 | 147403 | 133406 | 76302 | 43677 | 5.06151039555221 | 2 | 113546 | 45084 | 20937 | 9804 | 21291 | 398.857827250951 | 229 | 79 | 485 | 21291 | 20933 | 18988 | 16929 | 25.2814384733099 | 16 | 20206 | 17139 | 14041 | 9690 | 18564 | 269.914835164835 | 172 | 58 | 349.25 | 18564 | 18104 | 15954 | 13825 | 15.9349901500227 | 12 | 17346 | 14026 | 10896 | 6553 | 14204 | 355.124260771614 | 227 | 111 | 424 | 14204 | 14149 | 13625 | 12510 | 21.3126447744924 | 16 | 13988 | 12825 | 10312 | 6239 |
Mono_1 | Mono_1 | bigBed | bed | 1147526 | 19.7252576412212 | 16 | 10 | 23 | 1147526 | 902468 | 148257 | 12142 | 167325 | 137.020851636038 | 52 | 27 | 119 | 167325 | 160739 | 119736 | 75818 | 6.64697978803498 | 3 | 145578 | 57834 | 26945 | 12814 | 22005 | 681.180413542377 | 396 | 130 | 868 | 22005 | 21774 | 20533 | 18990 | 32.4537762174813 | 20 | 21210 | 18203 | 15375 | 11364 | 19497 | 442.628301790019 | 297 | 90 | 617 | 19497 | 19203 | 17713 | 15939 | 19.9783805627115 | 15 | 18570 | 15076 | 12121 | 8110 | 14557 | 594.220855945593 | 409 | 197 | 756 | 14557 | 14509 | 14204 | 13681 | 26.8391470227551 | 20 | 14405 | 13574 | 11445 | 7630 |
Mono_2 | Mono_2 | bigBed | bed | 1049614 | 16.0959333621693 | 12 | 8 | 18 | 1049614 | 708271 | 57199 | 8034 | 161934 | 107.400459446441 | 40 | 21 | 92 | 161934 | 153089 | 98400 | 59438 | 6.07984015752592 | 3 | 137110 | 53338 | 24636 | 11811 | 21763 | 526.648118366034 | 299 | 100.5 | 649 | 21763 | 21481 | 19872 | 18041 | 29.6665316410118 | 18 | 20894 | 17822 | 14916 | 10769 | 19170 | 346.398069900887 | 224 | 72 | 462 | 19170 | 18785 | 16907 | 15006 | 18.3057028842754 | 13 | 18139 | 14674 | 11675 | 7555 | 14425 | 462.577954939341 | 303 | 147 | 561 | 14425 | 14379 | 13985 | 13212 | 24.5177135849571 | 19 | 14267 | 13286 | 11013 | 7117 |
Track Hub data was generated for export to various genome browsers. Note that you need a server that is capable of serving the tracks to the genome browser via URL. Below, instructions are provided to view the tracks in the UCSC genome browser. Of course the files can also be viewed in other browsers such as the Ensembl genome browser.
hub.txt
file in the directory you just copied.
Hint: You can use the copy link functionality of your browser (right mouse click) on the track hub txt column in the table(s) below.
Don't forget to click on "Load Selected Hubs".bed.directory | track.hub.directory | track.hub.txt | |
sites | tracks_and_tables_data/sites/bed | tracks_and_tables_data/sites/trackHub_bigBed | tracks_and_tables_data/sites/trackHub_bigBed/hub.txt |
track.hub.directory | track.hub.txt | |
sites | tracks_and_tables_data/sites/trackHub_bigWig | tracks_and_tables_data/sites/trackHub_bigWig/hub.txt |