This section presents a summary of the data import step.
Data type | Bisulfite sequencing data set |
Data source | /TL/deep/fhgfs/projects/epigenomicLandscape/hematopoiesis/03_blueprint_pub/data/proc/GRCh38/methyl/meth_calls/forRnBeads_v05_no_sex |
Genome assembly used | hg38 |
Number of samples | 71 |
Number of sites | 25418025 |
Detection p-values | absent |
coverage information is | present |
The loaded dataset includes a table of sample annotations describing the following traits:
No. | Trait | Missing Values | Type |
1 | bedFile | identifiers or text | |
2 | sampleName | identifiers or text | |
3 | cellTypeCode | all identical | |
4 | donorId | categories or text | |
5 | donorNumber | numbers | |
6 | nominalCellNumber | numbers | |
7 | actualCellNumber | numbers | |
8 | sex | categories or text | |
9 | cellSourceCurated | all identical | |
10 | ploidy | categories or text | |
11 | constituents | identifiers or text | |
12 | library | all identical | |
13 | plateId | categories or text | |
14 | flowcell | categories or text | |
15 | lane | numbers | |
16 | acquisitionDate | categories or text | |
17 | shipmentDate | 43 | categories or text |
18 | dnaPrepDate | categories or text | |
19 | libraryDate | categories or text | |
20 | libraryVolume | 28 | categories or text |
21 | libraryDnaAmount | 28 | categories or text |
22 | reads | 43 | numbers |
23 | cmp_cellnum | numbers | |
24 | cmp_donor_02I_vs_GNN | 20 | categories or text |
25 | cmp_donor_02I_vs_GPJ | 20 | categories or text |
26 | cmp_donor_02I_vs_2I_ | 38 | categories or text |
27 | cmp_donor_GNN_vs_GPJ | 33 | categories or text |
28 | cmp_donor_GNN_vs_2I_ | 51 | categories or text |
29 | cmp_donor_GPJ_vs_2I_ | 51 | categories or text |
30 | cmp_ploidy_2N_vs_4N | 36 | categories or text |
31 | cmp_ploidy_2N_vs_8N | 37 | categories or text |
32 | cmp_ploidy_2N_vs_16N | 38 | categories or text |
33 | cmp_ploidy_2N_vs_32N | 27 | categories or text |
34 | cmp_ploidy_4N_vs_8N | 52 | categories or text |
35 | cmp_ploidy_8N_vs_16N | 54 | categories or text |
36 | cmp_ploidy_16N_vs_32N | 44 | categories or text |
The full sample annotation table is available as a comma-separated value file accompanying this report.