Data Import

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This section presents a summary of the data import step.

Data type Bisulfite sequencing data set
Data source /TL/deep/fhgfs/projects/epigenomicLandscape/hematopoiesis/03_blueprint_pub/data/proc/GRCh38/methyl/meth_calls/forRnBeads_v05_no_sex
Genome assembly used hg38
Number of samples 71
Number of sites 25418025
Detection p-values absent
coverage information is present

Sample Annotation

The loaded dataset includes a table of sample annotations describing the following traits:

No. Trait Missing Values Type
1 bedFile identifiers or text
2 sampleName identifiers or text
3 cellTypeCode all identical
4 donorId categories or text
5 donorNumber numbers
6 nominalCellNumber numbers
7 actualCellNumber numbers
8 sex categories or text
9 cellSourceCurated all identical
10 ploidy categories or text
11 constituents identifiers or text
12 library all identical
13 plateId categories or text
14 flowcell categories or text
15 lane numbers
16 acquisitionDate categories or text
17 shipmentDate 43 categories or text
18 dnaPrepDate categories or text
19 libraryDate categories or text
20 libraryVolume 28 categories or text
21 libraryDnaAmount 28 categories or text
22 reads 43 numbers
23 cmp_cellnum numbers
24 cmp_donor_02I_vs_GNN 20 categories or text
25 cmp_donor_02I_vs_GPJ 20 categories or text
26 cmp_donor_02I_vs_2I_ 38 categories or text
27 cmp_donor_GNN_vs_GPJ 33 categories or text
28 cmp_donor_GNN_vs_2I_ 51 categories or text
29 cmp_donor_GPJ_vs_2I_ 51 categories or text
30 cmp_ploidy_2N_vs_4N 36 categories or text
31 cmp_ploidy_2N_vs_8N 37 categories or text
32 cmp_ploidy_2N_vs_16N 38 categories or text
33 cmp_ploidy_2N_vs_32N 27 categories or text
34 cmp_ploidy_4N_vs_8N 52 categories or text
35 cmp_ploidy_8N_vs_16N 54 categories or text
36 cmp_ploidy_16N_vs_32N 44 categories or text

The full sample annotation table is available as a comma-separated value file accompanying this report.