| filtering.whitelist |
|
| filtering.blacklist |
|
| filtering.snp |
no |
| filtering.greedycut |
no |
| filtering.coverage.threshold |
1 |
| filtering.greedycut.rc.ties |
row |
| filtering.high.coverage.outliers |
no |
| filtering.low.coverage.masking |
no |
| normalization.method |
swan |
| normalization.background.method |
methylumi.noob |
| normalization.plot.shifts |
yes |
| filtering.context.removal |
CC, CAG, CAH, CTG, CTH, Other |
| filtering.missing.value.quantile |
1 |
| filtering.sex.chromosomes.removal |
no |
| filtering.deviation.threshold |
0 |
| distribution.subsample |
1000000 |
