Sample coverage summary
This section contains summary metrics on the number of sites and coverage can be found in the table below. The summary table below is also available as csv file.
- sampleName: Name of the sample
- sites_num: Number of sites covered in the sample
- sites_covgMean: Mean coverage of sites in the sample
- sites_covgMedian: Median coverage of sites in the sample
- sites_covgPerc25,75: 25 and 75 percentile of coverage of sites in the sample
- sites_numCovg5,10,30,60: Number of sites with coverage greater or equal to 5,10,30,60
| sampleName | sites_num | sites_covgMean | sites_covgMedian | sites_covgPerc25 | sites_covgPerc75 | sites_numCovg5 | sites_numCovg10 | sites_numCovg30 | sites_numCovg60 | |
| MK_1_D1_16N_1_R1 | MK_1_D1_16N_1_R1 | 2589818 | 1.08049909298646 | 1 | 1 | 1 | 1063 | 231 | 24 | 3 |
| MK_1_D1_16N_2_R1 | MK_1_D1_16N_2_R1 | 2411923 | 1.07900086362624 | 1 | 1 | 1 | 1061 | 209 | 24 | 5 |
| MK_1_D1_16N_3_R1 | MK_1_D1_16N_3_R1 | 3240309 | 1.10318923287872 | 1 | 1 | 1 | 1711 | 309 | 37 | 8 |
| MK_1_D1_16N_4_R1 | MK_1_D1_16N_4_R1 | 1311780 | 1.0404496180762 | 1 | 1 | 1 | 232 | 58 | 5 | 0 |
| MK_1_D1_2N_1_R1 | MK_1_D1_2N_1_R1 | 347930 | 1.02466013278533 | 1 | 1 | 1 | 48 | 0 | 0 | 0 |
| MK_1_D1_2N_2_R1 | MK_1_D1_2N_2_R1 | 809539 | 1.03435164951905 | 1 | 1 | 1 | 148 | 11 | 0 | 0 |
| MK_1_D1_2N_3_R1 | MK_1_D1_2N_3_R1 | 3849980 | 1.11273902721573 | 1 | 1 | 1 | 1599 | 401 | 56 | 13 |
| MK_1_D1_2N_4_R1 | MK_1_D1_2N_4_R1 | 352023 | 1.03395232697863 | 1 | 1 | 1 | 80 | 5 | 0 | 0 |
| MK_1_D1_2N_5_R1 | MK_1_D1_2N_5_R1 | 488148 | 1.03304325737276 | 1 | 1 | 1 | 156 | 20 | 0 | 0 |
| MK_1_D1_2N_6_R1 | MK_1_D1_2N_6_R1 | 164195 | 1.00543865525747 | 1 | 1 | 1 | 5 | 0 | 0 | 0 |
| MK_1_D1_32N_1_R1 | MK_1_D1_32N_1_R1 | 2422932 | 1.06802130641718 | 1 | 1 | 1 | 560 | 188 | 16 | 7 |
| MK_1_D1_32N_2_R1 | MK_1_D1_32N_2_R1 | 2873096 | 1.08681018664187 | 1 | 1 | 1 | 938 | 256 | 27 | 5 |
| MK_1_D1_32N_4_R1 | MK_1_D1_32N_4_R1 | 4121185 | 1.12221484839919 | 1 | 1 | 1 | 1804 | 411 | 70 | 16 |
| MK_1_D1_32N_5_R1 | MK_1_D1_32N_5_R1 | 453983 | 1.0285142835745 | 1 | 1 | 1 | 82 | 13 | 0 | 0 |
| MK_1_D1_32N_7_R1 | MK_1_D1_32N_7_R1 | 96886 | 1.00352992176372 | 1 | 1 | 1 | 0 | 0 | 0 | 0 |
| MK_1_D1_4N_1_R1 | MK_1_D1_4N_1_R1 | 443563 | 1.03401095222099 | 1 | 1 | 1 | 142 | 11 | 0 | 0 |
| MK_1_D1_4N_2_R1 | MK_1_D1_4N_2_R1 | 2726453 | 1.08153083878578 | 1 | 1 | 1 | 967 | 235 | 27 | 6 |
| MK_1_D1_4N_3_R1 | MK_1_D1_4N_3_R1 | 927956 | 1.0464892731983 | 1 | 1 | 1 | 355 | 39 | 3 | 0 |
| MK_1_D1_4N_4_R1 | MK_1_D1_4N_4_R1 | 628293 | 1.05067380983076 | 1 | 1 | 1 | 423 | 55 | 0 | 0 |
| MK_1_D1_8N_1_R1 | MK_1_D1_8N_1_R1 | 1484618 | 1.05133845878199 | 1 | 1 | 1 | 578 | 122 | 12 | 4 |
| MK_1_D1_8N_2_R1 | MK_1_D1_8N_2_R1 | 1994243 | 1.07662757246735 | 1 | 1 | 1 | 1384 | 234 | 27 | 5 |
| MK_1_D1_8N_3_R1 | MK_1_D1_8N_3_R1 | 3911607 | 1.11441921440472 | 1 | 1 | 1 | 1475 | 362 | 58 | 13 |
| MK_1_D1_8N_4_R1 | MK_1_D1_8N_4_R1 | 917047 | 1.0393851133039 | 1 | 1 | 1 | 333 | 39 | 5 | 0 |
| MK_1_D2_2N_1_R1 | MK_1_D2_2N_1_R1 | 683982 | 1.04768400338021 | 1 | 1 | 1 | 395 | 45 | 0 | 0 |
| MK_1_D2_2N_2_R1 | MK_1_D2_2N_2_R1 | 390662 | 1.05936845661979 | 1 | 1 | 1 | 385 | 30 | 0 | 0 |
| MK_1_D2_2N_3_R1 | MK_1_D2_2N_3_R1 | 401986 | 1.06065136596797 | 1 | 1 | 1 | 352 | 25 | 0 | 0 |
| MK_1_D2_2N_4_R1 | MK_1_D2_2N_4_R1 | 363655 | 1.02149564834802 | 1 | 1 | 1 | 72 | 5 | 0 | 0 |
| MK_1_D2_2N_5_R1 | MK_1_D2_2N_5_R1 | 384146 | 1.02149182862766 | 1 | 1 | 1 | 46 | 4 | 0 | 0 |
| MK_1_D2_2N_6_R1 | MK_1_D2_2N_6_R1 | 712899 | 1.0343120133427 | 1 | 1 | 1 | 281 | 33 | 4 | 0 |
| MK_1_D2_2N_7_R1 | MK_1_D2_2N_7_R1 | 342563 | 1.02159894676308 | 1 | 1 | 1 | 57 | 2 | 0 | 0 |
| MK_1_D2_2N_9_R1 | MK_1_D2_2N_9_R1 | 296863 | 1.02906391163601 | 1 | 1 | 1 | 77 | 10 | 0 | 0 |
| MK_1_D2_32N_1_R1 | MK_1_D2_32N_1_R1 | 4097165 | 1.11872819376325 | 1 | 1 | 1 | 1770 | 387 | 65 | 19 |
| MK_1_D2_32N_2_R1 | MK_1_D2_32N_2_R1 | 3894429 | 1.1183796135454 | 1 | 1 | 1 | 2153 | 474 | 93 | 16 |
| MK_1_D2_32N_3_R1 | MK_1_D2_32N_3_R1 | 3247253 | 1.09732564724707 | 1 | 1 | 1 | 1402 | 330 | 43 | 9 |
| MK_1_D2_32N_4_R1 | MK_1_D2_32N_4_R1 | 2913155 | 1.09290168219679 | 1 | 1 | 1 | 1482 | 290 | 20 | 9 |
| MK_1_D2_32N_5_R1 | MK_1_D2_32N_5_R1 | 2835367 | 1.08476186680595 | 1 | 1 | 1 | 1060 | 281 | 38 | 9 |
| MK_1_D2_32N_6_R1 | MK_1_D2_32N_6_R1 | 3280376 | 1.09672702153656 | 1 | 1 | 1 | 1128 | 320 | 49 | 9 |
| MK_1_D2_32N_7_R1 | MK_1_D2_32N_7_R1 | 3561527 | 1.10797278807658 | 1 | 1 | 1 | 1288 | 279 | 42 | 12 |
| MK_1_D2_4N_1_R1 | MK_1_D2_4N_1_R1 | 616867 | 1.05504914349446 | 1 | 1 | 1 | 447 | 42 | 0 | 0 |
| MK_1_D2_4N_2_R1 | MK_1_D2_4N_2_R1 | 1421156 | 1.05326016285334 | 1 | 1 | 1 | 624 | 141 | 12 | 0 |
| MK_1_D2_8N_1_R1 | MK_1_D2_8N_1_R1 | 4570527 | 1.13564365772262 | 1 | 1 | 1 | 2521 | 617 | 135 | 25 |
| MK_1_D2_8N_2_R1 | MK_1_D2_8N_2_R1 | 1109743 | 1.05911278557288 | 1 | 1 | 1 | 757 | 78 | 5 | 0 |
| MK_1_D3_16N_1_R1 | MK_1_D3_16N_1_R1 | 2697988 | 1.08584841741327 | 1 | 1 | 1 | 1229 | 207 | 15 | 3 |
| MK_1_D3_16N_2_R1 | MK_1_D3_16N_2_R1 | 2981222 | 1.09192639796701 | 1 | 1 | 1 | 1641 | 270 | 19 | 5 |
| MK_1_D3_2N_1_R1 | MK_1_D3_2N_1_R1 | 480635 | 1.05962320679934 | 1 | 1 | 1 | 400 | 35 | 0 | 0 |
| MK_1_D3_2N_2_R1 | MK_1_D3_2N_2_R1 | 445804 | 1.07079792913478 | 1 | 1 | 1 | 579 | 31 | 0 | 0 |
| MK_1_D3_2N_3_R1 | MK_1_D3_2N_3_R1 | 390064 | 1.05385782845892 | 1 | 1 | 1 | 325 | 47 | 0 | 0 |
| MK_1_D3_2N_4_R1 | MK_1_D3_2N_4_R1 | 1713528 | 1.06333541091829 | 1 | 1 | 1 | 582 | 93 | 7 | 0 |
| MK_1_D3_2N_5_R1 | MK_1_D3_2N_5_R1 | 528277 | 1.04321975024466 | 1 | 1 | 1 | 244 | 16 | 0 | 0 |
| MK_1_D3_2N_6_R1 | MK_1_D3_2N_6_R1 | 321071 | 1.02079602330949 | 1 | 1 | 1 | 46 | 0 | 0 | 0 |
| MK_1_D3_2N_7_R1 | MK_1_D3_2N_7_R1 | 1400179 | 1.05129701273909 | 1 | 1 | 1 | 500 | 81 | 8 | 0 |
| MK_1_D3_2N_8_R1 | MK_1_D3_2N_8_R1 | 754895 | 1.0334788281814 | 1 | 1 | 1 | 141 | 17 | 0 | 0 |
| MK_1_D3_2N_9_R1 | MK_1_D3_2N_9_R1 | 370135 | 1.02533399975685 | 1 | 1 | 1 | 44 | 5 | 0 | 0 |
| MK_1_D3_32N_3_R1 | MK_1_D3_32N_3_R1 | 4063147 | 1.11919258643608 | 1 | 1 | 1 | 1450 | 319 | 38 | 9 |
| MK_1_D3_32N_5_R1 | MK_1_D3_32N_5_R1 | 2837978 | 1.07771765672602 | 1 | 1 | 1 | 601 | 172 | 18 | 3 |
| MK_1_D3_32N_6_R1 | MK_1_D3_32N_6_R1 | 1902171 | 1.06133938536546 | 1 | 1 | 1 | 540 | 44 | 1 | 0 |
| MK_1_D3_32N_7_R1 | MK_1_D3_32N_7_R1 | 2973150 | 1.09475673948506 | 1 | 1 | 1 | 1542 | 313 | 22 | 4 |
| MK_1_D3_32N_8_R1 | MK_1_D3_32N_8_R1 | 1684463 | 1.04915750598262 | 1 | 1 | 1 | 278 | 60 | 5 | 0 |
| MK_1_D3_4N_1_R1 | MK_1_D3_4N_1_R1 | 1463029 | 1.05940825506535 | 1 | 1 | 1 | 613 | 67 | 5 | 0 |
| MK_1_D3_4N_2_R1 | MK_1_D3_4N_2_R1 | 1892706 | 1.07192189383877 | 1 | 1 | 1 | 1183 | 158 | 7 | 0 |
| MK_1_D3_8N_2_R1 | MK_1_D3_8N_2_R1 | 1555169 | 1.06617544459798 | 1 | 1 | 1 | 952 | 113 | 8 | 0 |
| MK_5_D1_16N_1_R1 | MK_5_D1_16N_1_R1 | 2987193 | 1.0864155747553 | 1 | 1 | 1 | 848 | 288 | 39 | 10 |
| MK_5_D1_16N_2_R1 | MK_5_D1_16N_2_R1 | 3909161 | 1.1160819418796 | 1 | 1 | 1 | 1162 | 358 | 46 | 10 |
| MK_5_D1_2N_1_R1 | MK_5_D1_2N_1_R1 | 1587686 | 1.04652431274194 | 1 | 1 | 1 | 375 | 94 | 4 | 0 |
| MK_5_D1_2N_2_R1 | MK_5_D1_2N_2_R1 | 1456103 | 1.04172163645017 | 1 | 1 | 1 | 272 | 68 | 3 | 0 |
| MK_5_D1_32N_1_R1 | MK_5_D1_32N_1_R1 | 3784110 | 1.10908641662108 | 1 | 1 | 1 | 1206 | 358 | 57 | 13 |
| MK_5_D1_32N_2_R1 | MK_5_D1_32N_2_R1 | 4617007 | 1.13519559316241 | 1 | 1 | 1 | 1877 | 488 | 84 | 24 |
| MK_5_D1_4N_1_R1 | MK_5_D1_4N_1_R1 | 2352282 | 1.06942662486896 | 1 | 1 | 1 | 559 | 181 | 21 | 4 |
| MK_5_D1_4N_2_R1 | MK_5_D1_4N_2_R1 | 2681138 | 1.07776809697972 | 1 | 1 | 1 | 737 | 215 | 28 | 4 |
| MK_5_D1_8N_1_R1 | MK_5_D1_8N_1_R1 | 3849934 | 1.11487157961669 | 1 | 1 | 1 | 1134 | 326 | 44 | 10 |
| MK_5_D1_8N_2_R1 | MK_5_D1_8N_2_R1 | 3066460 | 1.08832660461901 | 1 | 1 | 1 | 937 | 285 | 40 | 9 |
Covered sites and median coverages for each sample. Vertical bars depict the inter-quartile range.
No quality control plots are generated because all respective options are disabled.
