Data Import

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This section presents a summary of the data import step.

Data type Bisulfite sequencing data set
Data source /TL/deep/fhgfs/projects/epigenomicLandscape/hematopoiesis/03_blueprint_pub/data/proc/GRCh38/methyl/meth_calls/forRnBeads_v05_no_sex
Genome assembly used hg38
Number of samples 59
Number of sites 27360897
Detection p-values absent
coverage information is present

Sample Annotation

The loaded dataset includes a table of sample annotations describing the following traits:

No. Trait Missing Values Type
1 bedFile identifiers or text
2 sampleName identifiers or text
3 cellTypeCode categories or text
4 donorId categories or text
5 donorNumber numbers
6 nominalCellNumber numbers
7 actualCellNumber numbers
8 sex 38 categories or text
9 cellSourceCurated categories or text
10 ploidy 59 all missing
11 constituents identifiers or text
12 library 59 all missing
13 plateId 59 all missing
14 flowcell categories or text
15 lane numbers
16 acquisitionDate 59 all missing
17 shipmentDate 59 all missing
18 dnaPrepDate 59 all missing
19 libraryDate 59 all missing
20 libraryVolume 59 all missing
21 libraryDnaAmount 59 all missing
22 reads 59 all missing
23 cmp_ct_CMPvMEP 53 categories or text
24 cmp_ct_CMPvGMP 53 categories or text
25 cmp_ct_CMPvCLP 53 categories or text
26 cmp_ct_MLP3vGMP 53 categories or text
27 cmp_ct_CLPvMLP0 53 categories or text
28 cmp_ct_CLPvMLP1 53 categories or text
29 cmp_ct_CLPvMLP2 53 categories or text
30 cmp_ct_CLPvMLP3 53 categories or text
31 cmp_ct_MLP1vMLP2 53 categories or text
32 cmp_ct_MLP2vMLP3 53 categories or text
33 cmp_ct_MLP1vMLP3 53 categories or text
34 cmp_ct_MLP0vMLP1 53 categories or text
35 cmp_ct_MLP0vMLP2 53 categories or text
36 cmp_ct_MLP0vMLP3 53 categories or text
37 cmp_ct_HSCvMPP 42 categories or text
38 cmp_ct_MPPvCMP 48 categories or text
39 cmp_ct_HSCvML 26 categories or text
40 cmp_ct_MYEvLYM 35 categories or text
41 cmp_src_HSC_BMvCB 54 categories or text
42 cmp_src_HSC_BMvFL 55 categories or text
43 cmp_src_HSC_BMvPB 55 categories or text
44 cmp_src_HSC_CBvFL 54 categories or text
45 cmp_src_HSC_CBvPB 54 categories or text
46 cmp_src_HSC_FLvPB 55 categories or text
47 cmp_src_MPP_BMvCB 55 categories or text
48 cmp_src_MPP_BMvPB 54 categories or text
49 cmp_src_MPP_CBvPB 52 categories or text
50 cmp_HSCvMPP_PB 53 categories or text
51 cmp_HSCvMPP_CB 53 categories or text
52 cmp_HSCvMPP_BM 56 categories or text

The full sample annotation table is available as a comma-separated value file accompanying this report.