Data Import

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This section presents a summary of the data import step.

Data type Bisulfite sequencing data set
Data source /TL/deep/fhgfs/projects/epigenomicLandscape/hematopoiesis/03_blueprint_pub/data/proc/GRCh38/methyl/meth_calls/forRnBeads_v05_no_sex
Genome assembly used hg38
Number of samples 446
Number of sites 27361119
Detection p-values absent
coverage information is present

Sample Annotation

The loaded dataset includes a table of sample annotations describing the following traits:

No. Trait Missing Values Type
1 bedFile identifiers or text
2 sampleName identifiers or text
3 cellTypeCode categories or text
4 donorId 20 categories or text
5 donorNumber numbers
6 nominalCellNumber numbers
7 actualCellNumber numbers
8 sex 84 categories or text
9 cellSourceCurated categories or text
10 ploidy all identical
11 constituents identifiers or text
12 library all identical
13 plateId categories or text
14 flowcell categories or text
15 lane numbers
16 acquisitionDate 65 categories or text
17 shipmentDate 138 categories or text
18 dnaPrepDate categories or text
19 libraryDate categories or text
20 libraryVolume 156 categories or text
21 libraryDnaAmount 156 categories or text
22 reads 138 numbers
23 cmp_ct_CMPvMEP 381 categories or text
24 cmp_ct_CMPvGMP 380 categories or text
25 cmp_ct_CMPvCLP 380 categories or text
26 cmp_ct_MLP3vGMP 381 categories or text
27 cmp_ct_CLPvMLP0 381 categories or text
28 cmp_ct_CLPvMLP1 380 categories or text
29 cmp_ct_CLPvMLP2 382 categories or text
30 cmp_ct_CLPvMLP3 381 categories or text
31 cmp_ct_MLP1vMLP2 382 categories or text
32 cmp_ct_MLP2vMLP3 383 categories or text
33 cmp_ct_MLP1vMLP3 381 categories or text
34 cmp_ct_MLP0vMLP1 381 categories or text
35 cmp_ct_MLP0vMLP2 383 categories or text
36 cmp_ct_MLP0vMLP3 382 categories or text
37 cmp_ct_HSCvMPP 277 categories or text
38 cmp_ct_MPPvCMP 334 categories or text
39 cmp_ct_HSCvML 97 categories or text
40 cmp_ct_MYEvLYM 187 categories or text
41 cmp_src_HSC_BMvCB 393 categories or text
42 cmp_src_HSC_BMvFL 412 categories or text
43 cmp_src_HSC_BMvPB 401 categories or text
44 cmp_src_HSC_CBvFL 401 categories or text
45 cmp_src_HSC_CBvPB 390 categories or text
46 cmp_src_HSC_FLvPB 409 categories or text
47 cmp_src_MPP_BMvCB 403 categories or text
48 cmp_src_MPP_BMvPB 400 categories or text
49 cmp_src_MPP_CBvPB 377 categories or text
50 cmp_HSCvMPP_PB 386 categories or text
51 cmp_HSCvMPP_CB 381 categories or text
52 cmp_HSCvMPP_BM 415 categories or text

The full sample annotation table is available as a comma-separated value file accompanying this report.