This section contains summary metrics on the number of sites and coverage can be found in the table below. The summary table below is also available as csv file.
sampleName | sites_num | sites_covgMean | sites_covgMedian | sites_covgPerc25 | sites_covgPerc75 | sites_numCovg5 | sites_numCovg10 | sites_numCovg30 | sites_numCovg60 | |
CLP_1_D1_10_R1 | CLP_1_D1_10_R1 | 229746 | 1.01409382535496 | 1 | 1 | 1 | 18 | 4 | 0 | 0 |
CLP_1_D1_11_R1 | CLP_1_D1_11_R1 | 321144 | 1.01199461923623 | 1 | 1 | 1 | 25 | 4 | 0 | 0 |
CLP_1_D1_13_R1 | CLP_1_D1_13_R1 | 161856 | 1.00693826611309 | 1 | 1 | 1 | 1 | 0 | 0 | 0 |
CLP_1_D1_14_R1 | CLP_1_D1_14_R1 | 360554 | 1.02023829994952 | 1 | 1 | 1 | 98 | 8 | 0 | 0 |
CLP_1_D1_15_R1 | CLP_1_D1_15_R1 | 242780 | 1.0152483730126 | 1 | 1 | 1 | 15 | 0 | 0 | 0 |
CLP_1_D1_16_R1 | CLP_1_D1_16_R1 | 334868 | 1.02023483880215 | 1 | 1 | 1 | 49 | 0 | 0 | 0 |
CLP_1_D1_17_R1 | CLP_1_D1_17_R1 | 204029 | 1.00884188032093 | 1 | 1 | 1 | 8 | 0 | 0 | 0 |
CLP_1_D1_18_R1 | CLP_1_D1_18_R1 | 214325 | 1.01550915665461 | 1 | 1 | 1 | 16 | 0 | 0 | 0 |
CLP_1_D1_19_R1 | CLP_1_D1_19_R1 | 129173 | 1.01047432512986 | 1 | 1 | 1 | 3 | 0 | 0 | 0 |
CLP_1_D1_1_R1 | CLP_1_D1_1_R1 | 343497 | 1.01462603749087 | 1 | 1 | 1 | 30 | 7 | 0 | 0 |
CLP_1_D1_20_R1 | CLP_1_D1_20_R1 | 133161 | 1.00672869684067 | 1 | 1 | 1 | 0 | 0 | 0 | 0 |
CLP_1_D1_22_R1 | CLP_1_D1_22_R1 | 238787 | 1.01951530024666 | 1 | 1 | 1 | 37 | 0 | 0 | 0 |
CLP_1_D1_23_R1 | CLP_1_D1_23_R1 | 164968 | 1.01199626594249 | 1 | 1 | 1 | 17 | 0 | 0 | 0 |
CLP_1_D1_24_R1 | CLP_1_D1_24_R1 | 116183 | 1.01388327035797 | 1 | 1 | 1 | 5 | 0 | 0 | 0 |
CLP_1_D1_2_R1 | CLP_1_D1_2_R1 | 338809 | 1.015625322822 | 1 | 1 | 1 | 38 | 4 | 0 | 0 |
CLP_1_D1_3_R1 | CLP_1_D1_3_R1 | 306454 | 1.01128064897179 | 1 | 1 | 1 | 29 | 0 | 0 | 0 |
CLP_1_D1_4_R1 | CLP_1_D1_4_R1 | 102344 | 1.0054717423591 | 1 | 1 | 1 | 4 | 0 | 0 | 0 |
CLP_1_D1_5_R1 | CLP_1_D1_5_R1 | 206518 | 1.01104019988572 | 1 | 1 | 1 | 22 | 0 | 0 | 0 |
CLP_1_D1_6_R1 | CLP_1_D1_6_R1 | 275759 | 1.01329784340674 | 1 | 1 | 1 | 24 | 2 | 0 | 0 |
CLP_1_D1_7_R1 | CLP_1_D1_7_R1 | 204495 | 1.00932541137925 | 1 | 1 | 1 | 7 | 0 | 0 | 0 |
CLP_1_D1_9_R1 | CLP_1_D1_9_R1 | 364467 | 1.02086883037422 | 1 | 1 | 1 | 92 | 4 | 0 | 0 |
CMP_1_D2_10_R1 | CMP_1_D2_10_R1 | 136094 | 1.01722338971593 | 1 | 1 | 1 | 13 | 0 | 0 | 0 |
CMP_1_D2_11_R1 | CMP_1_D2_11_R1 | 204058 | 1.0175636338688 | 1 | 1 | 1 | 29 | 0 | 0 | 0 |
CMP_1_D2_12_R1 | CMP_1_D2_12_R1 | 169092 | 1.01343055851253 | 1 | 1 | 1 | 3 | 0 | 0 | 0 |
CMP_1_D2_13_R1 | CMP_1_D2_13_R1 | 168421 | 1.01343062919707 | 1 | 1 | 1 | 14 | 0 | 0 | 0 |
CMP_1_D2_14_R1 | CMP_1_D2_14_R1 | 112804 | 1.01383816176731 | 1 | 1 | 1 | 8 | 0 | 0 | 0 |
CMP_1_D2_15_R1 | CMP_1_D2_15_R1 | 133874 | 1.01133902027279 | 1 | 1 | 1 | 5 | 0 | 0 | 0 |
CMP_1_D2_18_R1 | CMP_1_D2_18_R1 | 133617 | 1.01405509777947 | 1 | 1 | 1 | 7 | 0 | 0 | 0 |
CMP_1_D2_1_R1 | CMP_1_D2_1_R1 | 219719 | 1.01258880661208 | 1 | 1 | 1 | 10 | 2 | 0 | 0 |
CMP_1_D2_20_R1 | CMP_1_D2_20_R1 | 158207 | 1.01535962378403 | 1 | 1 | 1 | 2 | 0 | 0 | 0 |
CMP_1_D2_21_R1 | CMP_1_D2_21_R1 | 126026 | 1.01118816752099 | 1 | 1 | 1 | 29 | 1 | 0 | 0 |
CMP_1_D2_23_R1 | CMP_1_D2_23_R1 | 103181 | 1.01082563650284 | 1 | 1 | 1 | 0 | 0 | 0 | 0 |
CMP_1_D2_2_R1 | CMP_1_D2_2_R1 | 150027 | 1.0123177827991 | 1 | 1 | 1 | 6 | 0 | 0 | 0 |
CMP_1_D2_3_R1 | CMP_1_D2_3_R1 | 174829 | 1.0073214398069 | 1 | 1 | 1 | 0 | 0 | 0 | 0 |
CMP_1_D2_4_R1 | CMP_1_D2_4_R1 | 224139 | 1.01284470797139 | 1 | 1 | 1 | 6 | 0 | 0 | 0 |
CMP_1_D2_5_R1 | CMP_1_D2_5_R1 | 161955 | 1.00768114599734 | 1 | 1 | 1 | 4 | 0 | 0 | 0 |
CMP_1_D2_6_R1 | CMP_1_D2_6_R1 | 257682 | 1.01379607423103 | 1 | 1 | 1 | 14 | 0 | 0 | 0 |
CMP_1_D2_7_R1 | CMP_1_D2_7_R1 | 294497 | 1.0150392024367 | 1 | 1 | 1 | 40 | 0 | 0 | 0 |
CMP_1_D2_8_R1 | CMP_1_D2_8_R1 | 227976 | 1.01576043092255 | 1 | 1 | 1 | 13 | 0 | 0 | 0 |
CMP_1_D2_9_R1 | CMP_1_D2_9_R1 | 211770 | 1.01322189167493 | 1 | 1 | 1 | 13 | 0 | 0 | 0 |
GMP_1_D1_10_R1 | GMP_1_D1_10_R1 | 411033 | 1.04520075030472 | 1 | 1 | 1 | 219 | 12 | 0 | 0 |
GMP_1_D1_12_R1 | GMP_1_D1_12_R1 | 246419 | 1.01704819839379 | 1 | 1 | 1 | 17 | 1 | 0 | 0 |
GMP_1_D1_13_R1 | GMP_1_D1_13_R1 | 444551 | 1.02848492074025 | 1 | 1 | 1 | 80 | 11 | 0 | 0 |
GMP_1_D1_14_R1 | GMP_1_D1_14_R1 | 582267 | 1.02736373519365 | 1 | 1 | 1 | 103 | 13 | 0 | 0 |
GMP_1_D1_15_R1 | GMP_1_D1_15_R1 | 438336 | 1.02666219521098 | 1 | 1 | 1 | 90 | 10 | 0 | 0 |
GMP_1_D1_16_R1 | GMP_1_D1_16_R1 | 412210 | 1.03584823269693 | 1 | 1 | 1 | 147 | 14 | 0 | 0 |
GMP_1_D1_17_R1 | GMP_1_D1_17_R1 | 405648 | 1.02755591054313 | 1 | 1 | 1 | 78 | 4 | 0 | 0 |
GMP_1_D1_18_R1 | GMP_1_D1_18_R1 | 286569 | 1.01031514225195 | 1 | 1 | 1 | 9 | 0 | 0 | 0 |
GMP_1_D1_19_R1 | GMP_1_D1_19_R1 | 475048 | 1.02642259308533 | 1 | 1 | 1 | 70 | 7 | 0 | 0 |
GMP_1_D1_1_R1 | GMP_1_D1_1_R1 | 348773 | 1.02572160115605 | 1 | 1 | 1 | 59 | 6 | 0 | 0 |
GMP_1_D1_20_R1 | GMP_1_D1_20_R1 | 420298 | 1.03082336818162 | 1 | 1 | 1 | 113 | 4 | 0 | 0 |
GMP_1_D1_21_R1 | GMP_1_D1_21_R1 | 429873 | 1.02892947451922 | 1 | 1 | 1 | 107 | 8 | 0 | 0 |
GMP_1_D1_22_R1 | GMP_1_D1_22_R1 | 363663 | 1.02069773389099 | 1 | 1 | 1 | 53 | 1 | 0 | 0 |
GMP_1_D1_23_R1 | GMP_1_D1_23_R1 | 300034 | 1.02474386236227 | 1 | 1 | 1 | 65 | 8 | 0 | 0 |
GMP_1_D1_24_R1 | GMP_1_D1_24_R1 | 397917 | 1.02792542163315 | 1 | 1 | 1 | 125 | 5 | 0 | 0 |
GMP_1_D1_2_R1 | GMP_1_D1_2_R1 | 216942 | 1.02195978648671 | 1 | 1 | 1 | 46 | 1 | 0 | 0 |
GMP_1_D1_4_R1 | GMP_1_D1_4_R1 | 452504 | 1.01903408588653 | 1 | 1 | 1 | 39 | 5 | 0 | 0 |
GMP_1_D1_5_R1 | GMP_1_D1_5_R1 | 378789 | 1.02345633056926 | 1 | 1 | 1 | 54 | 9 | 0 | 0 |
GMP_1_D1_6_R1 | GMP_1_D1_6_R1 | 508812 | 1.02769588767561 | 1 | 1 | 1 | 142 | 10 | 0 | 0 |
GMP_1_D1_7_R1 | GMP_1_D1_7_R1 | 318639 | 1.01453055024652 | 1 | 1 | 1 | 36 | 4 | 0 | 0 |
GMP_1_D1_8_R1 | GMP_1_D1_8_R1 | 470327 | 1.03739525904318 | 1 | 1 | 1 | 183 | 21 | 0 | 0 |
GMP_1_D1_9_R1 | GMP_1_D1_9_R1 | 421107 | 1.02988076664601 | 1 | 1 | 1 | 87 | 2 | 0 | 0 |
HSC_1_D4_11_R1 | HSC_1_D4_11_R1 | 206481 | 1.00984594224166 | 1 | 1 | 1 | 17 | 3 | 0 | 0 |
HSC_1_D4_12_R1 | HSC_1_D4_12_R1 | 682581 | 1.02617125293555 | 1 | 1 | 1 | 152 | 17 | 0 | 0 |
HSC_1_D4_13_R1 | HSC_1_D4_13_R1 | 223491 | 1.01142775324286 | 1 | 1 | 1 | 12 | 0 | 0 | 0 |
HSC_1_D4_14_R1 | HSC_1_D4_14_R1 | 116779 | 1.01103794346586 | 1 | 1 | 1 | 1 | 0 | 0 | 0 |
HSC_1_D4_15_R1 | HSC_1_D4_15_R1 | 181463 | 1.00940136556764 | 1 | 1 | 1 | 8 | 0 | 0 | 0 |
HSC_1_D4_16_R1 | HSC_1_D4_16_R1 | 124405 | 1.0043486998111 | 1 | 1 | 1 | 0 | 0 | 0 | 0 |
HSC_1_D4_17_R1 | HSC_1_D4_17_R1 | 306681 | 1.01508081687486 | 1 | 1 | 1 | 26 | 4 | 0 | 0 |
HSC_1_D4_18_R1 | HSC_1_D4_18_R1 | 157782 | 1.01268205498726 | 1 | 1 | 1 | 15 | 0 | 0 | 0 |
HSC_1_D4_1_R1 | HSC_1_D4_1_R1 | 628229 | 1.02389574502291 | 1 | 1 | 1 | 99 | 15 | 0 | 0 |
HSC_1_D4_21_R1 | HSC_1_D4_21_R1 | 203389 | 1.01473531016918 | 1 | 1 | 1 | 38 | 7 | 0 | 0 |
HSC_1_D4_24_R1 | HSC_1_D4_24_R1 | 156297 | 1.01360870650108 | 1 | 1 | 1 | 10 | 0 | 0 | 0 |
HSC_1_D4_2_R1 | HSC_1_D4_2_R1 | 286188 | 1.01394188435574 | 1 | 1 | 1 | 39 | 10 | 0 | 0 |
HSC_1_D4_3_R1 | HSC_1_D4_3_R1 | 460922 | 1.02632766498453 | 1 | 1 | 1 | 138 | 11 | 0 | 0 |
HSC_1_D4_4_R1 | HSC_1_D4_4_R1 | 511960 | 1.02007578717087 | 1 | 1 | 1 | 77 | 8 | 0 | 0 |
HSC_1_D4_5_R1 | HSC_1_D4_5_R1 | 544912 | 1.02117773145022 | 1 | 1 | 1 | 97 | 8 | 0 | 0 |
HSC_1_D4_6_R1 | HSC_1_D4_6_R1 | 450645 | 1.02519721732184 | 1 | 1 | 1 | 102 | 10 | 0 | 0 |
HSC_1_D4_7_R1 | HSC_1_D4_7_R1 | 482747 | 1.01870130731004 | 1 | 1 | 1 | 47 | 6 | 0 | 0 |
HSC_1_D4_9_R1 | HSC_1_D4_9_R1 | 211179 | 1.00711244962804 | 1 | 1 | 1 | 7 | 1 | 0 | 0 |
MLP0_1_D1_10_R1 | MLP0_1_D1_10_R1 | 358458 | 1.0171261347215 | 1 | 1 | 1 | 28 | 0 | 0 | 0 |
MLP0_1_D1_11_R1 | MLP0_1_D1_11_R1 | 318148 | 1.01758615487132 | 1 | 1 | 1 | 40 | 4 | 0 | 0 |
MLP0_1_D1_12_R1 | MLP0_1_D1_12_R1 | 216394 | 1.0166779115872 | 1 | 1 | 1 | 14 | 0 | 0 | 0 |
MLP0_1_D1_13_R1 | MLP0_1_D1_13_R1 | 227287 | 1.01161087083731 | 1 | 1 | 1 | 30 | 2 | 0 | 0 |
MLP0_1_D1_14_R1 | MLP0_1_D1_14_R1 | 281989 | 1.01302533077531 | 1 | 1 | 1 | 6 | 0 | 0 | 0 |
MLP0_1_D1_15_R1 | MLP0_1_D1_15_R1 | 210277 | 1.01188907964257 | 1 | 1 | 1 | 11 | 0 | 0 | 0 |
MLP0_1_D1_16_R1 | MLP0_1_D1_16_R1 | 298222 | 1.01632005687039 | 1 | 1 | 1 | 34 | 0 | 0 | 0 |
MLP0_1_D1_17_R1 | MLP0_1_D1_17_R1 | 255950 | 1.01423324868138 | 1 | 1 | 1 | 20 | 2 | 0 | 0 |
MLP0_1_D1_18_R1 | MLP0_1_D1_18_R1 | 173599 | 1.01405538050334 | 1 | 1 | 1 | 6 | 0 | 0 | 0 |
MLP0_1_D1_19_R1 | MLP0_1_D1_19_R1 | 238468 | 1.01648439203583 | 1 | 1 | 1 | 16 | 0 | 0 | 0 |
MLP0_1_D1_1_R1 | MLP0_1_D1_1_R1 | 334854 | 1.01708505796556 | 1 | 1 | 1 | 20 | 1 | 0 | 0 |
MLP0_1_D1_20_R1 | MLP0_1_D1_20_R1 | 270485 | 1.0138787733146 | 1 | 1 | 1 | 21 | 1 | 0 | 0 |
MLP0_1_D1_21_R1 | MLP0_1_D1_21_R1 | 267048 | 1.01784697882029 | 1 | 1 | 1 | 30 | 0 | 0 | 0 |
MLP0_1_D1_22_R1 | MLP0_1_D1_22_R1 | 219766 | 1.00946006206602 | 1 | 1 | 1 | 4 | 0 | 0 | 0 |
MLP0_1_D1_23_R1 | MLP0_1_D1_23_R1 | 265448 | 1.0161161508092 | 1 | 1 | 1 | 19 | 0 | 0 | 0 |
MLP0_1_D1_24_R1 | MLP0_1_D1_24_R1 | 266852 | 1.01507202494266 | 1 | 1 | 1 | 15 | 0 | 0 | 0 |
MLP0_1_D1_2_R1 | MLP0_1_D1_2_R1 | 460065 | 1.01623248888744 | 1 | 1 | 1 | 31 | 8 | 0 | 0 |
MLP0_1_D1_3_R1 | MLP0_1_D1_3_R1 | 352576 | 1.01542362497731 | 1 | 1 | 1 | 21 | 4 | 0 | 0 |
MLP0_1_D1_4_R1 | MLP0_1_D1_4_R1 | 266080 | 1.00950841852075 | 1 | 1 | 1 | 12 | 1 | 0 | 0 |
MLP0_1_D1_5_R1 | MLP0_1_D1_5_R1 | 368768 | 1.01678833304408 | 1 | 1 | 1 | 28 | 5 | 0 | 0 |
MLP0_1_D1_6_R1 | MLP0_1_D1_6_R1 | 148542 | 1.01874217393061 | 1 | 1 | 1 | 15 | 1 | 0 | 0 |
MLP0_1_D1_7_R1 | MLP0_1_D1_7_R1 | 262847 | 1.01824255175064 | 1 | 1 | 1 | 21 | 0 | 0 | 0 |
MLP0_1_D1_8_R1 | MLP0_1_D1_8_R1 | 317401 | 1.01514172923211 | 1 | 1 | 1 | 36 | 0 | 0 | 0 |
MLP0_1_D1_9_R1 | MLP0_1_D1_9_R1 | 309373 | 1.01473302453672 | 1 | 1 | 1 | 28 | 5 | 0 | 0 |
MPP_1_D4_11_R1 | MPP_1_D4_11_R1 | 386753 | 1.01368315177904 | 1 | 1 | 1 | 39 | 11 | 1 | 0 |
MPP_1_D4_12_R1 | MPP_1_D4_12_R1 | 167079 | 1.01001322727572 | 1 | 1 | 1 | 9 | 0 | 0 | 0 |
MPP_1_D4_13_R1 | MPP_1_D4_13_R1 | 340233 | 1.017826019228 | 1 | 1 | 1 | 38 | 0 | 0 | 0 |
MPP_1_D4_14_R1 | MPP_1_D4_14_R1 | 285286 | 1.01763493476722 | 1 | 1 | 1 | 41 | 1 | 0 | 0 |
MPP_1_D4_15_R1 | MPP_1_D4_15_R1 | 317409 | 1.02073350157053 | 1 | 1 | 1 | 51 | 4 | 0 | 0 |
MPP_1_D4_17_R1 | MPP_1_D4_17_R1 | 128791 | 1.00923977607131 | 1 | 1 | 1 | 4 | 0 | 0 | 0 |
MPP_1_D4_19_R1 | MPP_1_D4_19_R1 | 215266 | 1.01723449128056 | 1 | 1 | 1 | 37 | 0 | 0 | 0 |
MPP_1_D4_20_R1 | MPP_1_D4_20_R1 | 153368 | 1.00997600542486 | 1 | 1 | 1 | 3 | 0 | 0 | 0 |
MPP_1_D4_21_R1 | MPP_1_D4_21_R1 | 207846 | 1.02584605910145 | 1 | 1 | 1 | 38 | 0 | 0 | 0 |
MPP_1_D4_22_R1 | MPP_1_D4_22_R1 | 185028 | 1.01887281924898 | 1 | 1 | 1 | 25 | 4 | 0 | 0 |
MPP_1_D4_23_R1 | MPP_1_D4_23_R1 | 195705 | 1.0157124243121 | 1 | 1 | 1 | 15 | 0 | 0 | 0 |
MPP_1_D4_2_R1 | MPP_1_D4_2_R1 | 246767 | 1.01707278525897 | 1 | 1 | 1 | 20 | 4 | 0 | 0 |
MPP_1_D4_3_R1 | MPP_1_D4_3_R1 | 214686 | 1.00933922100184 | 1 | 1 | 1 | 15 | 4 | 0 | 0 |
MPP_1_D4_4_R1 | MPP_1_D4_4_R1 | 226701 | 1.01525798298199 | 1 | 1 | 1 | 14 | 0 | 0 | 0 |
MPP_1_D4_5_R1 | MPP_1_D4_5_R1 | 164284 | 1.00794964817024 | 1 | 1 | 1 | 5 | 0 | 0 | 0 |
MPP_1_D4_6_R1 | MPP_1_D4_6_R1 | 339447 | 1.02443385859943 | 1 | 1 | 1 | 80 | 9 | 0 | 0 |
MPP_1_D4_7_R1 | MPP_1_D4_7_R1 | 259836 | 1.01109546021337 | 1 | 1 | 1 | 13 | 1 | 0 | 0 |
MPP_1_D4_8_R1 | MPP_1_D4_8_R1 | 212641 | 1.01486543046731 | 1 | 1 | 1 | 25 | 2 | 0 | 0 |
No quality control plots are generated because all respective options are disabled.