### /cm/shared/apps/star/2.4.2a/STAR --runMode genomeGenerate --runThreadN 8 --genomeDir /scratch/lab_bock/shared/projects/crop-seq/spiked_genomes/hg38_spiked --genomeFastaFiles /scratch/lab_bock/shared/projects/crop-seq/spiked_genomes/hg38_spiked/Homo_sapiens.GRCh38.dna.primary_assembly.spiked.fa --sjdbGTFfile /scratch/lab_bock/shared/projects/crop-seq/spiked_genomes/hg38_spiked/Homo_sapiens.GRCh38.77.spiked.gtf --sjdbOverhang 74 versionGenome 20201 genomeFastaFiles /scratch/lab_bock/shared/projects/crop-seq/spiked_genomes/hg38_spiked/Homo_sapiens.GRCh38.dna.primary_assembly.spiked.fa genomeSAindexNbases 14 genomeChrBinNbits 18 genomeSAsparseD 1 sjdbOverhang 74 sjdbFileChrStartEnd - sjdbGTFfile /scratch/lab_bock/shared/projects/crop-seq/spiked_genomes/hg38_spiked/Homo_sapiens.GRCh38.77.spiked.gtf sjdbGTFchrPrefix - sjdbGTFfeatureExon exon sjdbGTFtagExonParentTranscript transcript_id sjdbGTFtagExonParentGene gene_id sjdbInsertSave Basic