Preprocessing

The table below lists the options of the executed module.

SNP-based filtering was not performed because the site annotation does not include SNP information.

0 sites was detected as a high coverage outlier in at least one sample and removed at this step. An outlier site is defined as one whose coverage exceeds 50 times the 0.95-quantile of coverage values in its sample. The list of removed sites is available in a dedicated table accompanying this report.