Needleman-Wunsch pairwise alignment

Genomic_Sequence      TTCGGGATCGT-TTTTTTAGTAGGTGAAGTTTCGTTATGGATTTTTTTCGTCGGGGTTTC
[2]seq_A.fasta        TTCGGGATTGT-TTTTTTAGTAGGTGAAGTTTTGTTATGGATTTTTTTTGTTGGGGTTTC
[3]seq_B.fasta        TTTGGGATTGT-TTTTTTAGTAGGTGAAGTTTTGTTATGGATTTTTTTTGTTGGGGTTTT
[4]seq_C.fasta        TTCGGGATCGT-TTTTTTAGTAGGTGAAGTTTTGTTATGGATTTTTTTCGTTGGGGTTTC
[5]seq_E.fasta        TTTGGGATTGTTTTTTTTAGCAGGTGAAGTTTTGTTATGGATTTTTTTTGTTGGGGTTTT
[6]seq_H.fasta        TTCGGGATTGT-TTTTTTAGTAGGTGAAGTTTTGTTATGGATTTTTTTTGTTGGGGTTTC
[7]seq_I.fasta        TTTGGGATTGT-TTTTTTAGTAGGTGAAGTTTTGTTATGGATTTTTTTTGTTGGGGTTTT

Genomic_Sequence      G-CGTTGTTTCGTTCGTTTTTAGTCGTTGG-TTAAGGTCGCGGTCGCGTAGGCGTAGTGT
[2]seq_A.fasta        G-TGTTGTTTTGTTCGTTTTTTGTTGTTGG-TTAA----G-GAA-AAAAAAAAATAGTGT
[3]seq_B.fasta        G-TGTTGTTTTGTTTGTTTTTAGTTGTTGG-TTAAGGTTGTGGTTGTGTAGCTGTAGTGT
[4]seq_C.fasta        G-TGTTGTTTTGTTCGTTTTTAGTCGTTGG-TTAAGGTTGCGGTCGCGTAGGCGTAGTGT
[5]seq_E.fasta        GATGTTGTTTCGTTTGTTTCTAGTTGTTGGTTTAAGGTCGTGGTTGTGTAGGCGTAGTGT
[6]seq_H.fasta        G-TGTTGTTTTGTTCGTTTTTTGTTGTTGG-TTAAGGTCGCGGTCGCGTAGGCGTAGTGT
[7]seq_I.fasta        G-TGTTGTTTTGTTTGTTTTTAGTTGTTGG-TTAAGGTTGTGGTTGTGTAGGTGTAGTGT

Genomic_Sequence      CGCGTTTCGTCGTCGTTTCGTTTTGTTCGTCGTTGCGGAAGGCGT-CGCGCGTAGTAACG
[2]seq_A.fasta        CGCGTTTCGTCGTCGTTTAGTTTTGTTCGTGGTTGCGGAAGGCGGTTGCGCGTAGTAACG
[3]seq_B.fasta        TGTGTTTTGTCGTTGTTTTGTTTTGTTTGTTGTTGTGGATGGTGT-TGTGTGTAGCAGTG
[4]seq_C.fasta        CGCGTTCCGTCGTCGTTTCGTTTTGTTCGTTGTTGTGGAAGGTGT-TGCGCGTAGTAATG
[5]seq_E.fasta        CGCGTTTCGTCGTTGTTTTGTTTTGTTCGTCGTTGCGGAAGGTGT-TGTGCGTAGCAATG
[6]seq_H.fasta        CGCGTTTCGTCGTCGTTTTGTTTTGTTCGTCGTTGCGGAAGGCGGTTGCGCGTAGTAACG
[7]seq_I.fasta        TGTGTTTTGTTGTTGTTTTGTTTTGTTTGTTGTTGTGGAAGGTGT-TGTGTGTAGTAATG

Genomic_Sequence      CGTA-TTTTTTTTTTAGGAATTCGCGGAGGGAGCGTAGGTTCGAAGAGTTTTTGGACG
[2]seq_A.fasta        TGTA-TTTTTTTTTTAGGAATTAGTGGAGGGAGCGTAGGTTCGAAGAGTTTTTGGACG
[3]seq_B.fasta        TGTA-TTTTTTTTTCAGGAATTTGTGGAGGGAGTGTAGGTTTGAAGAGCTTTTGGATG
[4]seq_C.fasta        CGTA-TTTTTTTTTTAGGAATTCGTGGAGGGAGTGTAGGTTCGAAGAGTTTTTGGATG
[5]seq_E.fasta        CGTA-TTTTTTTTTTAGGAATTTGTGGAGGGAGTGTAGGTTTGAAGAGTTTTTGGATG
[6]seq_H.fasta        TGTA-TTTTTTTTTTAGGAATTTGTGGAGGGAGCGTAGGTTCGAAGAGTTTTTGGACG
[7]seq_I.fasta        TGTATTTTTTTTTTTAGGAATTTGTGGAGGGAGTGTAGGTTTGAAGAGTTTTTGGATG

Generated with BiQ Analyzer v3.0 - (c) Pavlo Lutsik, Christoph Bock 2011