This report was generated on 2015-11-07 by RnBeads version 1.3.2.
This section presents a summary of the data import step.
| Data type | Bisulfite sequencing data set |
| Data source | /DEEP_fhgfs/projects/deep/51_Tcells/02_production_analysis/data/bed |
| Genome assembly used | hg19 |
| Number of samples | 13 |
| Number of sites | 27679670 |
| Detection p-values | absent |
| coverage information is | present |
The loaded dataset includes a table of sample annotations describing the following traits:
| No. | Trait | Missing Values | Type |
| 1 | bedFile | identifiers or text | |
| 2 | sampleId | identifiers or text | |
| 3 | cellType | categories or text | |
| 4 | individual | categories or text | |
| 5 | technology | categories or text | |
| 6 | sex | all identical | |
| 7 | disease | all identical | |
| 8 | cmp_TCMvsTN | 5 | categories or text |
| 9 | cmp_TEMvsTCM | 5 | categories or text |
| 10 | cmp_TEMvsTN | 5 | categories or text |
| 11 | cmp_TCMvsTN_WGBS | 9 | categories or text |
| 12 | cmp_TEMvsTCM_WGBS | 9 | categories or text |
| 13 | cmp_TEMvsTN_WGBS | 9 | categories or text |
| 14 | cmp_TCMvsTN_NOMe | 9 | categories or text |
| 15 | cmp_TEMvsTCM_NOMe | 9 | categories or text |
| 16 | cmp_TEMvsTN_NOMe | 9 | categories or text |
| 17 | cmp_TEMvsTEMRA_NOMe | 10 | categories or text |
| 18 | cmp_TNvsTEMRA_NOMe | 10 | categories or text |
| 19 | cmp_tech_TCM | 9 | categories or text |
| 20 | cmp_tech_TEM | 9 | categories or text |
| 21 | cmp_tech_TN | 9 | categories or text |
| 22 | cmp_individual | 1 | categories or text |
The full sample annotation table is available as a comma-separated value file accompanying this report.